Amber8 Module: ptraj 

 GLY  GLY  LYS  TRP  SER  LYS  SER  SER  VAL  VAL 
 GLY  TRP  PRO  THR  VAL  ARG  GLU  ARG  MET  ARG 
 ARG  ALA  GLU  PRO  ALA  ALA  ASP  GLY  VAL  GLY 
 ALA  ALA  SER  ARG  ASP  LEU  GLU  LYS  HIE  GLY 
 ALA  ILE  THR  SER  SER  ASN  THR  ALA  ALA  THR 
 ASN  ALA  ALA  CYS  ALA  TRP  LEU  GLU  ALA  GLN 
 GLU  GLU  GLU  GLU  VAL  GLY  PHE  PRO  VAL  THR 
 PRO  GLN  VAL  PRO  LEU  ARG  PRO  MET  THR  TYR 
 LYS  ALA  ALA  VAL  ASP  LEU  SER  HIE  PHE  LEU 
 LYS  GLU  LYS  GLY  GLY  LEU  GLU  GLY  LEU  ILE 
 HIE  SER  GLN  ARG  ARG  GLN  ASP  ILE  LEU  ASP 
 LEU  TRP  ILE  TYR  HIE  THR  GLN  GLY  TYR  PHE 
 PRO  ASP  TRP  GLN  ASN  TYR  THR  PRO  GLY  PRO 
 GLY  VAL  ARG  TYR  PRO  LEU  THR  PHE  GLY  TRP 
 CYS  TYR  LYS  LEU  VAL  PRO  VAL  GLU  PRO  ASP 
 LYS  VAL  GLU  GLU  ALA  ASN  LYS  GLY  GLU  ASN 
 THR  SER  LEU  LEU  HIE  PRO  VAL  SER  LEU  HIE 
 GLY  MET  ASP  ASP  PRO  GLU  ARG  GLU  VAL  LEU 
 GLU  TRP  ARG  PHE  ASP  SER  ARG  LEU  ALA  PHE 
 HIE  HIE  VAL  ALA  ARG  GLU  LEU  HIE  PRO  GLU 
 TYR  PHE  LYS  ASN  Na+  Na+  Na+  Na+  Na+  Na+ 
 WAT  WAT  WAT  WAT  WAT  WAT  WAT  WAT  WAT  WAT 
 ...
 WAT  WAT  WAT 
Scanning Box
Successfully completed readParm.

PTRAJ: Processing input file...
       Input is from standard input

PTRAJ: trajin Zeta_md1_pt.mdcrd 705 705

PTRAJ: trajout LES_10ns_VGFPV.pdb pdb

PTRAJ: Successfully read the input file.
       Coordinate processing will occur on 1 frames.
       Summary of I/O and actions follows:

INPUT COORDINATE FILES
  File (Zeta_md1_pt.mdcrd) is an AMBER trajectory (with box info) with 705 sets (processing only 1)

OUTPUT COORDINATE FILE
  File (LES_10ns_VGFPV.pdb) is a PDB file

ACTIONS
  Stack is NULL

Processing AMBER trajectory file Zeta_md1_pt.mdcrd

Set      1                                                  
Set     50                                                  
Set    100                                                  
Set    150                                                  
Set    200                                                  
Set    250                                                  
Set    300                                                  
Set    350                                                  
Set    400                                                  
Set    450                                                  
Set    500                                                  
Set    550                                                  
Set    600                                                  
Set    650                                                  
Set    700     .

PTRAJ: Successfully read in 705 sets and processed 1 sets.
       Dumping accumulated results (if any)