AMBER Archive (2008)

Subject: Re: AMBER: distance restraint in minimization

From: David A. Case (case_at_biomaps.rutgers.edu)
Date: Wed Dec 17 2008 - 12:49:56 CST

On Wed, Dec 17, 2008, luzhenw1_at_msu.edu wrote:

>    For the first one, ' ERROR no map function for O4 T :data= 11 ASN ND2 
> 142 T O4 2.5'.  it seems to me that the name is not defined in the map. My
> way to fix it is just modify the map (map.DG-AMBER ) and use makeDIST_RST 
> -map  option to load the modified map. it works for me at least.

Usually, if you just have a few restraints, it is easier to create your
own RST file by hand than to go through makeDIST_RST. That way, you
don't have to worry about maps, and so on.

...dac

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