AMBER Archive (2008)

Subject: Re: AMBER: AMBER forfield choose

From: Wang,Ying (wangying_at_ufl.edu)
Date: Thu Nov 20 2008 - 09:05:28 CST

Thanks a lot!
But how can I combine these two forcefield together?

Thanks!

On Thu Nov 20 09:45:20 EST 2008, Barbault Florent
<florent.barbault_at_univ-paris-diderot.fr> wrote:

> Hello,
>
> I think you should use glycam and ff03. This works pretty well.
> Glycam deals with carbohydrates efficiently. Biomacromolecules
> and water are included in ff03 along with some ions
> Hope this will help. Regards
> Florent
>
> Le jeudi 20 novembre 2008, Wang,Ying a ??crit??:
>> Hi, dear all,
>> if i want to simulate a system including glycoprotein, protein,
>> polysacchride and ions. which forcefiled should i use? gaff?
>> Thanks a lot!
>>
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>
>
> -- -------------------------------------------------
> Dr Florent Barbault
> Maitre de conferences
>
> NEW ADDRESS !!!
>
> Universite Paris Diderot
> Laboratoire ITODYS
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> 75013 Paris FRANCE
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> tel : (33) 01-57-27-88-50
> e-mail : florent.barbault_at_univ-paris-diderot.fr
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--
Wang,Ying

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