AMBER Archive (2008)

Subject: Re: AMBER: AMBER10 installation question

From: David A. Case (
Date: Tue Nov 18 2008 - 06:05:07 CST

On Tue, Nov 18, 2008, Jeffrey wrote:
> I am trying to install AMBER10 and the corresponding ambertools. As in
> the INSTALLATION, the ambertools was installed successfully with the
> parameter: ./configure_at icc
> But when moving to the second stage to install AMBER10 with the parameter:
> ./configure_amber ifort, the installation halted with the following error
> message:
> ncgentab.o(.text+0x5e8): In function `yyparse':
> : undefined reference to `__intel_f2int'

You compiled netcdf first with icc (ambertools), then later with gcc (Amber
itself). There should not be anything wrong with that, but it looks like
there is. Please try the following before compiling Amber:

   cd $AMBERHOME/src
   make clean

I'm not sure whether this problem is unique to your situation or not -- if
not, it is a little surprising that no one has reported this problem before.

Be sure to let us know if the above fix doesn't solve the problem.


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