AMBER Archive (2008)

Subject: AMBER: problem

From: Arturas Ziemys (arturas.ziemys_at_uth.tmc.edu)
Date: Sun Nov 16 2008 - 23:07:38 CST

Hi,

How to create many copies of the same identical non-standard residue ?

I want to solvate those and put into simulation. Right now I have stuck on that, as I have prepared OFF file from single residue. However when I load OFF file and load pdb file with many copies of the same residue I get variable with no name. I did not find the way to modifay/assigne the name to it. I have created new unit (createUnit) and try to copy individual residues into it ( add B A.1 ) , but it did not work.

Arturas

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