AMBER Archive (2008)

Subject: Re: AMBER: Amber 9 installation problems

From: drugdesign (drugdesign_at_yandex.ru)
Date: Wed Nov 12 2008 - 01:36:51 CST

I am trying to install Amber 9 on OpenSuse 11 64 bit system:

/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../lib64/libX11.a(xcb_io.o): In function `_XReply':
(.text+0x9ec): undefined reference to `xcb_xlib_unlock'
/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../lib64/libX11.a(xcb_io.o): In function `_XAllocIDs':
(.text+0xbfc): undefined reference to `xcb_generate_id'
/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../lib64/libX11.a(xcb_io.o): In function `_XIDHandler':
(.text+0xc45): undefined reference to `xcb_generate_id'
/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../lib64/libX11.a(xcb_io.o): In function `_XSend':
(.text+0xd03): undefined reference to `xcb_flush'
/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../lib64/libX11.a(xcb_io.o): In function `wait_or_poll_for_event':
(.text+0x3d2): undefined reference to `xcb_poll_for_event'
collect2: ld returned 1 exit status
make[2]: *** [xaLeap] Error 1
make[2]: Leaving directory `/usr/local/amber9/src/leap/src/leap'
make[1]: *** [install] Error 2
make[1]: Leaving directory `/usr/local/amber9/src/leap'
make: *** [serial] Error 2

12.11.08, 02:22, "David A. Case" <case_at_biomaps.rutgers.edu>:

> On Tue, Nov 11, 2008, drugdesign wrote:
> > But now I have xleap installation problem, which is described here:
> > http://structbio.vanderbilt.edu/archives/amber-archive/2006/0656.php
> This is a way-old message, and should not apply to current code. Can explain
> exactly what your problem is? The archive message just says "xleap is likely
> to fail...", but we need to know exactly what happened in your case.
> ....dac
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