AMBER Archive (2008)

Subject: AMBER: How to set up a water slab in Amber?

From: Zhao, Zhen (zhaozh) (zhaozh_at_ucmail.uc.edu)
Date: Tue Sep 30 2008 - 16:23:06 CDT

Hi, all

I want to set up a water slab in Amber. For example, I want the system to be periodic in both x and y directions , but not the z direction.
Does anyone know how to do this in Amber? It seems that the keyword "ntb" has only three options(no periodic, periodic with constant
volume and periodic with constant pressure). Thanks in advance!

Sincerely

Zhen
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