AMBER Archive (2008)

Subject: Re: AMBER: Location of vdw radii and partial charges for ff99SB

From: Carlos Simmerling (
Date: Mon Sep 29 2008 - 09:58:45 CDT

these use the same vdw and charges for ff94, so look in
dat/leap/prep/all_amino94* and dat/leap/parm/parm94.dat

On Mon, Sep 29, 2008 at 9:08 AM, Charles Letner, Ph.D.
<> wrote:
> Hello,
> Is there a file (or two) that lists the vdw radii and partial charges for
> each amino acid atom type for the ff99SB. I am looking for both charged and
> uncharged amino acids and n/co-terminal parameters. I am looking for a file
> (or two) that is easy to "read".
> Cheers,
> Chuck
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