AMBER Archive (2008)

Subject: Re: AMBER: to prepare pdb file fro unusual amino acid.

From: Hakkim Boy (
Date: Wed Sep 24 2008 - 09:41:33 CDT

dera amber users
                we can draw the unusual amino acid with the help of gauss view and we can derive the force field parameters for that amino acid using antechamber. Thank you

V. Hakkim
Junior Research Fellow
Chemical laboratory
Central leather research institute
Mobile No:9791041235

--- On Wed, 24/9/08, priya priya <> wrote:

From: priya priya <>
Subject: AMBER: to prepare pdb file fro unusual amino acid.
Date: Wednesday, 24 September, 2008, 1:33 PM

Hi Amber Users,

I am looking for some way to prepare pdb files for a molecule with unusual amino acid, that is not incluede in Xleap of Amber.
Can anybody suggest me some tool that can be use to draw the molecule.

Priya Anand

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