AMBER Archive (2008)

Subject: AMBER: MMPBSA error

From: Cristina Sisu (csds2_at_cam.ac.uk)
Date: Tue Sep 23 2008 - 05:30:38 CDT

Hi all,

I've got a problem using the mm_pbsa.pl script. Whenever I try to use
it I get the following error:

> Use of uninitialized value in concatenation (.) or string at
> /usr/local/amber9/exe/mm_pbsa.pl line 22.
> Can't locate mm_pbsa_global.pm in @INC (@INC contains: /src/mm_pbsa
> /usr/lib/perl5/5.8.6/x86_64-linux-thread-multi /usr/lib/perl5/5.8.6
> /usr/lib/perl5/site_perl/5.8.6/x86_64-linux-thread-multi
> /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl
> /usr/lib/perl5/vendor_perl/5.8.6/x86_64-linux-thread-multi
> /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl .) at
> /usr/local/amber9/exe/mm_pbsa.pl line 23.
> BEGIN failed--compilation aborted at /usr/local/amber9/exe/mm_pbsa.pl
> line 23.

I have this problem with both amber 9 and 10, and for both my simulation
and the one used in the tutorial
(http://amber.scripps.edu/tutorials/advanced/tutorial3/section3.htm). Is
this a fault of way amber is installed or can it be due to some errors
in my input files?

Cheers,
Cristina

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