AMBER Archive (2008)

Subject: AMBER: The forming of micelle

From: Chih-Ying Lin (chihying_at_usc.edu)
Date: Mon Sep 22 2008 - 13:06:24 CDT

Hi
I heard that it takes very long to see a micelle forming.
How long should be the simulation time to see the micelle forming?
How many nanoseconds to put on the simulation?

Is there any particular difference to simulate the micelles than the tutorials described?
My simulation steps are
1. prepare the topology files and coordinate files for the water and the solute
2. generate the simulation box / put water and solute together
3. do the minimisation
4. run MD with longer simulation time

Thank you
Lin

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