AMBER Archive (2008)

Subject: AMBER: problem with traj and strip waters

From: Steve Seibold (
Date: Thu Sep 18 2008 - 09:13:38 CDT

Thanks for you comments. So far nothing has worked (i.e. adding "nobox"
command). I have tried loading both the prmtop and mdcrd into VMD;
however, I do get an error (in VMD) saying "file.mdcrd could not be
loaded because the number of atoms could not be determined". I thus,
loaded a pdb file of my structure containing no waters, but I got the
same error message from VMD. I would have thought the number of atoms
was in the prmtop file? Should I remake the topology file again?


Thanks again for your assistance.



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