AMBER Archive (2008)

Subject: AMBER: ESURF - SASA - isolate residues

From: Deepangi Pandit (dpandit_at_brandeis.edu)
Date: Fri Sep 05 2008 - 09:23:23 CDT

Hi All:
       Finally, I was able to calculate solvent accessible surface area (SASA) using options gbsa=2 and surften=1 over the entire trajectory. I observed from the output that SASA does change from frame to frame. Now, I want to isolate residues of the protein which are responsible for the change in SASA from one frame to another. Is there a way to do this or is it possible somehow?

Thank you.
Deepa
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