AMBER Archive (2008)

Subject: Re: AMBER: Source FIles of SANDER

From: Maicon Sartin (mapsartin_at_gmail.com)
Date: Wed Aug 27 2008 - 07:47:47 CDT

The problem is that i want study source files SANDER for know where is make
the parallel programming, then need lower amont of files for analysed.

But, i understand what they are answering and thanks.

2008/8/26 Ross Walker <ross_at_rosswalker.co.uk>

> Just to add, if you want to remove them 'safely' you can do:
>
> cd $AMBERHOME/src/
> make clean
>
> and this will return the src tree to just containing all the original
> source
> files without the preprocessed intermediates and object files.
>
> All the best
> Ross
>
> > -----Original Message-----
> > From: owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu] On Behalf
> > Of Carlos Simmerling
> > Sent: Tuesday, August 26, 2008 4:22 PM
> > To: amber_at_scripps.edu
> > Subject: Re: AMBER: Source FIles of SANDER
> >
> > they are intermediate files used for compilation, after you get the
> > executable you don't need them anymore. be careful, though- there are
> > some source files with an underscore that are needed. it doesn't hurt
> > to leave them.
> >
> > On Tue, Aug 26, 2008 at 7:18 PM, Maicon Sartin <mapsartin_at_gmail.com>
> > wrote:
> > > Thanks for answers,
> > >
> > > But then, these files don't make part of the AMBER code, they are make
> > for
> > > only compilation?
> > >
> > >
> > > 2008/8/26 Bill Ross <ross_at_cgl.ucsf.edu>
> > >>
> > >> > Which the difference in source files of SANDER with underline (_)
> and
> > >> > without underline?
> > >>
> > >> Assuming there's a non-underline version of the same file name, the
> > >> underline versions have been run through cpp (C Pre Processor) to
> > >> handle preprocessing directives like "#ifdef MPI". Fortran did not
> > >> do such preprocessing when I wrote the portable compilation system
> > >> for Amber, so I coded it explicitly, using these intermediate files.
> > >> The underlined files are then compiled by the fortran compiler.
> > >>
> > >> Bill
> > >>
> -----------------------------------------------------------------------
> > >> The AMBER Mail Reflector
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> > >
> > >
> > >
> > > --
> > > Maicon A. Sartin
> > > mapsartin_at_gmail.com
> > >
> >
> >
> >
> > --
> > ===================================================================
> > Carlos L. Simmerling, Ph.D.
> > Associate Professor Phone: (631) 632-1336
> > Center for Structural Biology Fax: (631) 632-1555
> > CMM Bldg, Room G80
> > Stony Brook University E-mail: carlos.simmerling_at_gmail.com
> > Stony Brook, NY 11794-5115 Web: http://comp.chem.sunysb.edu
> > ===================================================================
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>
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-- 
Maicon A. Sartin
mapsartin_at_gmail.com

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