AMBER Archive (2008)

Subject: RE: AMBER: installation amber on suse11.0

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Tue Aug 26 2008 - 09:39:31 CDT

Hi Selami,

 

elsize.cc is a standalone program and so problems with its compilation will
not affect any other calculations such as MD with sander or pmemd, analysis
with ptraj etc.

 

Also note that this is why we have the test cases in order to check that the
installation is giving the correct answers. Make sure you run these for
ambertools and for sander in both serial and parallel. If all pass or just
have minor differences then everything is good.

 

Good luck,

 

Ross

 

From: owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu] On Behalf Of
selami ercan
Sent: Tuesday, August 26, 2008 3:57 AM
To: amber_at_scripps.edu
Subject: AMBER: installation amber on suse11.0

 

hi!
I was using suse 10.3 before installing suse 11.0. I also was using amber9
with suse 10.3 and there was not any installation problems with it.
but I installation on suse 11.0 gives error. the error is elsize.cc. I have
searched it on net and saw a solution about it. the solution is adding
#include <stdlib.h> and #include <string.h> to amberX/src/etc/elsize.cc.
I tried it and installation finished succesfully. I want to learn that if
these changes will make an error or any variations on calculations. and
apart form this installation of dock gives compiler problems and I have
solved them with a solution like that of amber.

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