AMBER Archive (2008)

Subject: AMBER: Querry

From: dipti lele (diptisl86_at_gmail.com)
Date: Tue Aug 26 2008 - 06:50:32 CDT

Hello all,

   I have two seperate peptides (to be precise one protein and another
peptide) i have to join them together at the C terminal end. How can I do
it? How can i do it using leap? i have given the BOND command but leap is
not able to find the bond parameters for C- N bond.
   What should I do in this regard. do I need to use some visualisation
software. I tried with Pymol but appending of the molecule I could not do.

Can you help me in this matter.

Thanks a lot

With regards, 

-- 
Deepti Lele,
NII, New Delhi.

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