AMBER Archive (2008)

Subject: AMBER: Error runing Addles

From: Shultz, Jack (JShultz_at_nas.edu)
Date: Thu Aug 21 2008 - 22:25:17 CDT

I get these error message running addles. Is my molecule too big? I have 1973 atoms.
 
file rprm name=(str1.prmtop) read
file rcrd name=(str1.inpcrd) pack=2 read
file wprm name=(neb.prmtop) wovr
file wcrd name=(neb.inpcrd) wovr
action
~ use original mass
omas
pimd
~ make 1 copies of atom 1 to 1973 (the whole system)
space numc=1 pick #prt 1 1973 done
*EOD
 
$ $AMBERHOME/exe/addles <addles.in >addles.out
     21 [main] addles 3656 _cygtls::handle_exceptions: Error while dumping state
 (probably corrupted stack)
Segmentation fault (core dumped)
 
space numc=2 pick #prt 1 1973 done

$ $AMBERHOME/exe/addles <addles.in >addles.out
    630 [main] addles 2676 _cygtls::handle_exceptions: Error while dumping state
 (probably corrupted stack)
Segmentation fault (core dumped)
 
~ make 2 copies of atom 1 to 3 (the whole system)
space numc=2 pick #prt 1 3 done
 
$ $AMBERHOME/exe/addles <addles.in >addles.out
     22 [main] addles 3864 _cygtls::handle_exceptions: Error while dumping state
 (probably corrupted stack)
Segmentation fault (core dumped)

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