AMBER Archive (2008)

Subject: AMBER: MOIL-View is for SGI. How do we analyze LES trajectories?

From: Sasha Buzko (obuzko_at_ucla.edu)
Date: Wed Aug 20 2008 - 17:42:01 CDT

As a follow up to my earlier question.

Since MOIL-View site is down (and even when it's up, MOIL-View is for
SGI only), how do we analyze LES results?

AMBER manual doesn't contain any suggestions for LES analysis, other
then reference to MOIL-View. Are there any alternatives?

Thanks very much for any suggestions

Sasha

Sasha Buzko wrote:
> Carlos,
> the book with the command line claim: "Molecular modeling of proteins"
> edited by Andreas Kukol, ISBN 978-1-58829-864-5. The reference is on
> page 267 (chapter V).
>
> In the meantime, could you suggest other ways to deal with the LES data?
> Thanks
>
> Sasha
>
>
> Carlos Simmerling wrote:
>> no there is not a command line version. web site should be up soon,
>> just changed servers. not sure what that article meant, can you give
>> full ref?
>>
>> On 8/20/08, Sasha Buzko <obuzko_at_ucla.edu> wrote:
>>
>>> Hi,
>>> We are looking for ways to analyze LES results, and MOIL-View appears to
>>> be available only for SGI. On the other hand, "Molecular modeling of
>>> proteins" edited by Kukol (2008) claims on page 267 that there is a
>>> command line version that can run under Linux. Is it correct?
>>> If so, how can I get hold of it? If not, are there any alternatives?
>>> The original MOIL-View web site seems to be out of maintenance, and no
>>> recent information is available.
>>>
>>> Thanks for any hints
>>>
>>> Sasha
>>>
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>>
>>
>>

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