AMBER Archive (2008)

Subject: AMBER: constph

From: shubhra srivastava (
Date: Thu Aug 14 2008 - 06:54:57 CDT

I just installed amber 9.
I would like to use this new amber version to do constant pH simulation. I have succesfully generate parm and crd files following the instruction in the manual. But when I tried to run by the following command:

ambpdb -p prmtop < prmcrd | > cpin

I got the following error:

| New format PARM file being parsed.
| Version = 1.000 Date = 08/12/08 Time = 12:27:23
Can't locate in @INC (@INC contains: /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.7/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.5/x86_64-linux-thread-multi /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl/5.8.7 /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.7/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.5/x86_64-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl/5.8.7 /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 . /usr/local/amber9/exe) at /usr/local/amber9/exe/
 line 9.
BEGIN failed--compilation aborted at /usr/local/amber9/exe/ line 9.

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