AMBER Archive (2008)

Subject: AMBER: NAB: getseq_from_pdb()

From: IN SUK JOUNG (i.joung_at_gmail.com)
Date: Tue Aug 05 2008 - 19:00:21 CDT

I get weird results from NAB: getseq_from_pdb().
I attach the example NAB and PDB file. PDB file has two strands of
poly(dA). They are exactly same, but I get different type estimation from
getseq_from_pdb().

strand 1 is dna with sequence: AAAAAAAAAAAA
strand 2 is dnacc with sequence: AAAAAAAAAAAA 

-- 
Best,
In-Suk Joung
  • application/octet-stream attachment: dna.nab
  • chemical/x-pdb attachment: dna.pdb
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