AMBER Archive (2008)

Subject: AMBER: prepare an initial structure in Amber

From: oguz gurbulak (gurbulakoguz_at_yahoo.com)
Date: Thu Jul 31 2008 - 11:58:24 CDT


Hi Dear Amber Developers,
 
Is it possible to prepare an initial structure in Amber like in the figure I attached to the e-mail? In this initial structure the molecules must be inversed neighbor by neighbor to provide zero dipole moment. I'm waiting for your contributions.
 
Many thanks in advance


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