AMBER Archive (2008)
Subject: AMBER: for mask in rms
From: Wenyong Tong (wenyong_tong_at_yahoo.com)
Here is my measure_rmsd.trajin:
My question is how to define the mask for sugar (e.g. rms reference out rmsd_to_NMR.dat @C, O, H ???). If I did not define, the result is different from the one calculated from VMD.
Thanks in advance.