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AMBER Archive (2008)Subject: Re: AMBER: interaction energies in Amber
From: Alessandro Nascimento (al.s.nascimento_at_gmail.com)
I sent this e-mail before but didn't get it... maybe a problem with my
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Thanks, David, Carlos and Alan.
I am attaching a picture showing how different the results are.
These results were from a simulation of a waterbox (TIP3P) using
The system was setup using leap as follows:
wat = createunit wat
Then I minimized the system in sander, and ran a productive run
So far, I ve being defining vdw as :
iaci = Natomtypes*(iac[i]-1);
Using vmd to compute the interaction energy between molecule 1 and the
switching off
gives the results I show you in the picture
Any idea of what I am missing?
Thanks a lot,
--alessandro
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