AMBER Archive (2008)

Subject: AMBER: simulation with many formamide molecules

From: Adrien Delmont (adriendelmont_at_yahoo.com)
Date: Fri Jul 25 2008 - 05:44:23 CDT

  
Dear All,

Thanks a lot for your
suggestions. I want to run a simulation with many formamide
molecules. Well but How can I define the molecule number for a
'solvent' box containing lots of my own molecules. And Are there
any different options for running a simulation with many formamide
molecule ? also I want to see the simulation box and my formamide
molecules in it. So How can I do that?

Many thanks in advance

Adrien

      

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