AMBER Archive (2008)

Subject: Re: AMBER: Amber tools 1.2 test failure (installation)

From: Myunggi Yi (myunggi_at_gmail.com)
Date: Thu Jul 24 2008 - 12:09:11 CDT

Thank you.

OS: Ubuntu 6.06.1 LTS
Compiler: gcc version 3.4.6 (Ubuntu 3.4.6-1ubuntu2)
Option: ./configure_at gcc

When I run the test of amber tools 1.2, I've got the following error.

=========================
cd ptraj_matrix && ./Run.matrix

ptraj: analyze fluctuation matrices
Segmentation fault
  ./Run.matrix: Program error

make: *** [test.ptraj] Error 1
=========================

The following is the output of ptraj

++++++++++++++++++++++++++
ANALYZE
  1> ANALYZE MATRIX: Analyzing matrix 1rrb_vac_mwcovarmat and dumping
results to 1rrb_vac_mwcovarmat_evecs.dat
      Calculating 5 eigenvectors and thermodynamic data
  2> ANALYZE MATRIX: Analyzing matrix 1rrb_vac_distcovarmat and dumping
results to 1rrb_vac_distcovarmat_evecs.dat
      Calculating 5 eigenvectors and no thermodynamic data
      Eigenvectors will be reduced

Processing AMBER trajectory file 1rrb_vac.mdcrd

Set 1 ..........
++++++++++++++++++++++++++

All others are passed.

On Mon, Jul 21, 2008 at 7:36 PM, David A. Case <case_at_scripps.edu> wrote:

> On Mon, Jul 21, 2008, Myunggi Yi wrote:
> >
> > When I run the test of amber tools 1.2, I've got the following error.
> >
> >
> > =========================
> > cd ptraj_matrix && ./Run.matrix
> >
> > ptraj: analyze fluctuation matrices
> > Segmentation fault
> > ./Run.matrix: Program error
> >
> > make: *** [test.ptraj] Error 1
>
> What compiler, OS? What options did you pass to configure_at?
>
> ...dac
>
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-- 
Best wishes,

Myunggi Yi
==================================
KLB 419
Institute of Molecular Biophysics
Florida State University
Tallahassee, FL 32306

Office: (850) 645-1334
http://www.scs.fsu.edu/~myunggi
myunggi_at_gmail.com

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