AMBER Archive (2008)

Subject: RE: AMBER: solvate dna in TIP3PBOX 10.0

From: Ross Walker (
Date: Thu Jul 24 2008 - 07:29:51 CDT

Hi Collins,


In AMBER 9 and 10 WATBOX216 has been renamed as TIP3PBOX so you would


solvateoct dna TIP3PBOX 10.0


Good luck,



From: [] On Behalf Of
Collins Nganou
Sent: Thursday, July 24, 2008 2:29 AM
Subject: AMBER: solvate dna in TIP3PBOX 10.0


Dear Amber,

I want to solvate dna in solvatebox TIP3PBOX 10.0, by:
> solvateOct dna WATBOX216 10
solvateOct: Argument #2 is type String must be of type: [unit]
usage: solvateOct <solute> <solvent> <buffer> [aniso] [closeness]

But this didn't work.

I use the set of parameters parmbsc0, describe in

Please someone can tell me how to process.

Thanks a lot.



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