AMBER Archive (2008)

Subject: AMBER: the plot of the groove width versus time for RNA

From: 欧阳德方 (ouyangdf1978_at_hotmail.com)
Date: Thu Jul 17 2008 - 18:35:31 CDT

Hi, all
 
I run MD for RNA.I want to draw the plot of its major groove width versus time. Curves can only calculate one spot for it. If I want to make the time picture, I have to run MD in short time and calculate one spot for it, then take all spot with time.
 
I think we should have better method for it. Could anyone give one advice?
 
 
Thanks,
 
Ouyang
 
School of Pharmacy
University of Queensland
 
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