AMBER Archive (2008)

Subject: AMBER: about RMSD per residue

Date: Wed Jul 16 2008 - 08:48:05 CDT


   Thanks for several response. However, I guess I
didn't make it clear what RMSD per residue means. There
are several papers using RMSD per residue. I am quite
sure it is not RMSF and I don't know how to use PTRAJ
to calculate.  IF you have access to biophysical
chemistry, please check this paper:

                        Biophysical Chemistry 130
(2007) 65–75   Figure 1C

    any suggestion about how to calculate it is
welcome. Thanks in advance.



The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)