AMBER Archive (2008)

Subject: AMBER: about RMSD per residue

From: luzhenw1_at_msu.edu
Date: Wed Jul 16 2008 - 08:48:05 CDT

Hi,

   Thanks for several response. However, I guess I
didn't make it clear what RMSD per residue means. There
are several papers using RMSD per residue. I am quite
sure it is not RMSF and I don't know how to use PTRAJ
to calculate.  IF you have access to biophysical
chemistry, please check this paper:

                        Biophysical Chemistry 130
(2007) 65–75   Figure 1C
 

    any suggestion about how to calculate it is
welcome. Thanks in advance.

 

 

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
      to majordomo_at_scripps.edu