AMBER Archive (2008)

Subject: Re: AMBER: local coordinate system question

From: David A. Case (
Date: Wed Jun 25 2008 - 09:32:16 CDT

On Wed, Jun 25, 2008, caoch wrote:
> Does someone know the algorithm of defining the residue (ligand) local
> coordinate system and some open tools for rotating coordinate system?

NAB (in AmberTools) has a chapter on "rigid body transformations" that can
simplify what you are trying to do.


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