AMBER Archive (2008)

Subject: AMBER: A-prime RNA input file

From: 欧阳德方 (ouyangdf1978_at_hotmail.com)
Date: Tue Jun 24 2008 - 06:16:27 CDT

Hi, all,
 
 
I want to build A-prime RNA (A'-RNA) pdb file. The sequence is as following:
      5'- GCAACAGUUACUGCGACGUUU-3'
 3'- UUCGUUGUCAAUGACGCUGCA-5
Because it is irregular, I cannot use nucgen to build it. But NAB from website only builds irregular A-RNA, not A'-RNA.
NAB:http://structure.usc.edu/make-na/server.html
 
Could u give me some advices ?
 
Thanks!
 
Ouyang
 
 
 
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