AMBER Archive (2008)

Subject: Re: AMBER: Installation Problem of AMBER10

From: Carlos Simmerling (carlos.simmerling_at_gmail.com)
Date: Thu Jun 19 2008 - 06:05:21 CDT

I'm not sure how to help, butI see lots of results for search google for
amber solaris10

maybe those will help while you're waiting for a reply from someone
that has gotten it to work.
good luck

On Thu, Jun 19, 2008 at 6:57 AM, bhargav patel <bhargav62_at_gmail.com> wrote:
>
>
> at 4:10 PM
> Subject: Installation Problem of AMBER10
> To: majordomo_at_scripps.edu
>
>
>
>
>
>
> I am trying to install AMBER10 on my Sun Ultra 40 workstation with
> Solaris10.
>
> with ./configure_amber -help i get the following message.
> ==================================================================
>
> # ./configure_amber -help
>
> Usage: ./configure [flags] [compiler/architecture]
>
> where <compiler/architecture> is one of:
>
> compaqf90, hpf90, ifort, pgf90, sgi_altix, sgi_mips,
>
> sparc, xlf90_aix, xlf90_suse, xlf90_macosx, xlf90_bluegene,
>
> ifort_macosx, g95, gfortran, pathscale
>
> Parallel option flags:
>
> -mpi Use native MPI (assumes that the proper path will be searched)
>
> -mpi2 Like -mpi, but assumes mpi2 compatibility
>
> -nopar Explicit request of no MPI, the default
>
> -lamsource Use LAM/MPI (compile from source code)
>
> -lam Use (existing) LAM/MPI (MPI_HOME must be set)
>
> -mpich Use MPICH (MPI_HOME must be set)
>
> -mpich2 Use MPICH2 (MPI_HOME must be set)
>
> -openmpi Use OpenMPI (MPI_HOME must be set)
>
> -intelmpi Use Intel MPI (MPI_HOME must be set,
>
> e.g. to /opt/intel/mpi/2.0)
>
> -scali Use scali MPI (MPI_HOME must be set, e.g. to /opt/scali)
>
> Platform option flags:
>
> -gnucompat Add a second underscore to some symbols to maintain
>
> GNU link compatibility (g95, gfortran, pgf90).
>
> -p4 Optimize for Pentium 4 processor (pgf90,g95,
>
> gfortran, pathscale). Adds SSE1, SSE2 vectorisation
>
> where available.
>
> -cygwin Add CygWin flags for Windows (g95, gfortran).
>
> General flags:
>
> -mmtsb Request building sander for MMTSB.
>
> -static Static linking, i.e., prevent linking with shared libraries.
>
> -verbose Add verbose compiler comment and warning flags.
>
> -nobintraj Do not include support for binary (netCDF) trajectory files
>
> -nolfs Remove compile flags for Large File Support
>
> -nosanderidc Do not include support for IDC>0 in Sander.
>
> Environment variables:
>
> MKL_HOME Root directory of the Intel Math Kernel Library
>
> for example, /opt/intel/mkl/8.0.
>
> The MKL helps some with performance, but it is generally
>
> not a big deal if you leave this variable empty.
>
> GOTO Location for the "Goto" optimized blas library; this is
>
> used if MKL_HOME is *not* defined.
>
> ========================================================================
>
> Can anyone tell me which flag and compiler I shuold use for my system for my
> system.
>
> 

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