AMBER Archive (2008)

Subject: AMBER: ptraj

From: fatima.chami_at_durham.ac.uk
Date: Wed Jun 18 2008 - 10:21:50 CDT

Dear Amber's users,

I need to extract the coordinates of two atoms on a given number of residues
from an MD trajectory file.

I tried the following script within Ptraj but it did not dump any output and end
up with a segmentation fault:

trajin stack8w_md2-10_no_wat.binpos
vector v1 :4_at_C11 corr :4_at_O2 out C11O2.out

any help

fatima

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