AMBER Archive (2008)

Subject: RE: AMBER: program to calculate rmsd

From: Ross Walker (
Date: Tue Jun 17 2008 - 03:26:53 CDT

Hi Ram,


The ptraj source code is provided - you can download Ambertools for free
(see and this includes the ptraj module.


Good luck,



From: [] On Behalf Of
rams rams
Sent: Monday, June 16, 2008 7:28 PM
Subject: AMBER: program to calculate rmsd



Are there any programs (source code) available to calculate the rms
deviations ? Though ptraj does the job for me, I would like to look at what
actually the ptraj is doing while calculating the rms deviations ?

Thankyou very much.


The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)