AMBER Archive (2008)

Subject: RE: AMBER: program to calculate rmsd

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Tue Jun 17 2008 - 03:26:53 CDT


Hi Ram,

 

The ptraj source code is provided - you can download Ambertools for free
(see http://www.ambermd.org/) and this includes the ptraj module.

 

Good luck,

Ross

 

From: owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu] On Behalf Of
rams rams
Sent: Monday, June 16, 2008 7:28 PM
To: amber_at_scripps.edu
Subject: AMBER: program to calculate rmsd

 

Hi,

Are there any programs (source code) available to calculate the rms
deviations ? Though ptraj does the job for me, I would like to look at what
actually the ptraj is doing while calculating the rms deviations ?

Thankyou very much.

Ram.

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