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AMBER Archive (2008)Subject: AMBER: Coordinated Zinc
From: Khaled Barakat (kbarakat_at_phys.ualberta.ca)
Hello,
I am trying to use Antechamber to create a prepin file for a zinc ion coordinated with 3 cysteine
the command i used is:
antechamber -i p5-out.pdb -fi pdb -o p5-out.prepin -fo prepi -c bcc -s 2
I always get this error (see under signature). I do not know what is wrong with that. any help will be
Running: /Users/khaled/amber-build/amber8/exe/bondtype -i ANTECHAMBER_BOND_TYPE.AC0 -o
Cannot successfully assign bond type for this molecule, please :
Running: /Users/khaled/amber-build/amber8/exe/atomtype -i ANTECHAMBER_AC.AC0 -o
Total number of electrons: 334; net charge: 0
Running: /Users/khaled/amber-build/amber8/exe/divcon
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