AMBER Archive (2008)

Subject: Re: AMBER: PROBLEM: AmberTools Installation using Ubuntu

From: Jens Lattig (Jens.Lattig_at_toulouse.inserm.fr)
Date: Tue Jun 10 2008 - 03:00:08 CDT

Thank you for the help, I solved this problem but - unfortunately -
found a new one.

It occurs still in running the Makefile_at:

   ./Xmu/libXmu.a -L/usr/X11R6/lib -lXt -lXext -lSM -lICE -lX11 -lXau -lXdmcp
   -lm -lpthread
   /usr/bin/ld: cannot find -lXext
   collect2: ld returned 1 exit status
   make[3]: *** [xaLeap] Error 1
   make[3]: Leaving directory `/opt/amber10/src/leap/src/leap'
   make[2]: *** [install_xleap] Error 2
   make[2]: Leaving directory `/opt/amber10/src/leap'
   make[1]: *** [install] Error 2
   make[1]: Leaving directory `/opt/amber10/src/leap'
   make: *** [install] Error 2

For a better troubleshooting, please find attached the configure.h and
Makefile_at

Thank you very much in advance.

Jens 

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Zitat von David Case <case_at_scripps.edu>:

>
> On Fri, Jun 06, 2008, Jens Lattig wrote:
>>
>> My System is Ubuntu 8.04 (Hardy Heron) installed on an Intel Core Duo.
>
> What does "gcc --version" report?
>
>>
>>   ./configure_at gcc
>>
>>   cd ../test
>>   make -f Makefile_at test
>>
>> resulted in the following error(s):
>>
>>   cc: /opt/amber10/lib/libnab.a: linker input file unused because linking
>>   not
>>   done
>
> This is innocuous, but annoying.  Maybe someone on the list knows why your
> version of gcc is issuing this warning.
>
>>   /usr/bin/ld: cannot find -lmpi
>
> This is weird.  You did not ask for mpi in your configure script.  Is there a
> chance you have old NAB stuff around, or that you tried at some point to ask
> for mpi?
>
> Please do the following:
>
> 1.  post your amber10/src/config.h file
>
> 2.  cd amber10/test/nab; nab -v duplex.nab
>       (and report what the result is).
>
> ...dac
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