AMBER Archive (2008)

Subject: Re: AMBER: Ptraj / ambmask | Using distance-based masks to strip a trajectory

From: Vlad Cojocaru (Vlad.Cojocaru_at_eml-r.villa-bosch.de)
Date: Fri Jun 06 2008 - 13:50:55 CDT

Sorry, of course. While writing the answer I shortly forgot about it.
AmberTools is for free so the latest ptraj is to be found there.

vlad

David Case wrote:
> On Fri, Jun 06, 2008, Vlad Cojocaru wrote:
>
>> I believe the ptraj from AMBER9 does not implement the new mask parser
>> (I believe this type of mask is available only in the new parser). What
>> I would suggest if you dont have AMBER10 is to download the stand-alone
>> version of ptraj from Tom Cheatham's webpage (latest version is 9.9h I
>> believe).
>>
>
> Please note that ptraj is a part of the (free) AmberTools package, not
> Amber10. To get the lastest version of ptraj, you should download and install
> AmberTools from http://ambermd.org.
>
> ...dac
>
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-- 
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Dr. Vlad Cojocaru

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e-mail:Vlad.Cojocaru[at]eml-r.villa-bosch.de

http://projects.villa-bosch.de/mcm/people/cojocaru/

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