AMBER Archive (2008)

Subject: AMBER: PROBLEM: AmberTools Installation using Ubuntu

From: Jens Lattig (Jens.Lattig_at_toulouse.inserm.fr)
Date: Fri Jun 06 2008 - 03:13:06 CDT

Hello!

I have a new problem, which I could not solve yet.

My System is Ubuntu 8.04 (Hardy Heron) installed on an Intel Core Duo.

I try to install AmberTools before going on to Amber10.

Finally, I made

   ./configure_at gcc

and

   make -f Makefile_at

run. I did not receive any obvious error message.

Unfortunatly, doing

   cd ../test
   make -f Makefile_at test

resulted in the following error(s):

   cc: /opt/amber10/lib/libnab.a: linker input file unused because linking not
   done
   cc: /opt/amber10/lib/libsym.a: linker input file unused because linking not
   done
   cc: /opt/amber10/lib/arpack.a: linker input file unused because linking not
   done
   cc: /opt/amber10/lib/lapack.a: linker input file unused because linking not
   done
   cc: /opt/amber10/lib/blas.a: linker input file unused because linking not
   done
   cc: /opt/amber10/lib/f2c.a: linker input file unused because linking not
   done
   /usr/bin/ld: cannot find -lmpi
   collect2: ld returned 1 exit status
   cc failed!
   /bin/sh: ./duplex: not found
   make[1]: *** [duplex_test] Error 127
   make[1]: Leaving directory `/opt/amber10/test/nab'
   make: *** [test.nab] Error 2

I was checking /opt/amber10/lib/ and all the files are there. Though,
I am not sure, if they become interpreted as links. What can I do?

Thank you in advance,

Jens 

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