AMBER Archive (2008)

Subject: Re: AMBER: syn and anti conformation

From: Carlos Simmerling (
Date: Wed Jun 04 2008 - 14:34:31 CDT

use ptraj to measure the dihedral angle for the glycosidic bond

On Wed, Jun 4, 2008 at 3:29 PM, Rabin <> wrote:
> Can someone suggest me how to determine whether the particular nucleotide
> conformation is syn or anti?
> thanks
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