AMBER Archive (2008)

Subject: AMBER: Trajectory in "Sietraj"

From: Alfredo Quevedo (
Date: Tue Jun 03 2008 - 08:35:20 CDT

Dear Amber users. I have recently seen the link of the "Sietraj" application in Amberīs homepage, and found it ver interesting. I downloaded it and run the examples with everything running ok. I tried to apply this package to analyze my trajectories generated with Amber8 and found some errors with the calculation stoped. Searching the source of the problem, I find out that the examples of Sietraj are based on a .trj trajectory (I think that is Gromacs), so here comes my question: Has anyone tryed this software using an Amber trajectory? Otherwise, is there a way to convert the .mdcrd files into a .trj file?
Thanks in advance for the help,
Best regards

Alfredo Quevedo

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