AMBER Archive (2008)

Subject: RE:AMBER: VMD file generation 4 - mdcrd ptraj analysis

From: Campbell, Patrick (pcampbell_at_msm.edu)
Date: Mon Jun 02 2008 - 14:54:06 CDT

Hello Dr. Simmerling,
 
Here is the ptraj script for the mdcrd file as requested.
 
 
> $AMBERHOME/exe/ptraj trajin 1nsMD_040408.mdcrd
 
When I am attempting this command now however, I am getting a different error message and not the one that I previously sent to you.
 
 
Amber8 Module: ptraj

Could not open file (trajin) with mode (r)
ERROR in ptrajInitializeState(): Attempting to open parameter/topology file trajin
 
Suggestions will be warmly appreciated.
Pat

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