AMBER Archive (2008)

Subject: RE: AMBER: WARNING in readAmberTrajectory(): Set #7918 is corrupted (-)

From: Qi Yan (kid1412_at_uab.edu)
Date: Wed Mar 26 2008 - 09:42:54 CDT

It seems I can use "more" to view my trajectory, but there are all
coordinate numbers in trajectory which is hard to read and find where is
the error frame.

-----Original Message-----
From: owner-amber_at_scripps.edu on behalf of Da-Wei Li
Sent: Tue 3/25/2008 12:08 PM
To: amber_at_scripps.edu
Subject: Re: AMBER: WARNING in readAmberTrajectory(): Set #7918 is
corrupted (-)
 
Hi,

Do you use ASCII format? If so, you can use any TEXT editor(for
example, MS word or an simple "more" command under linux) software to
check whether there is an error or not. You can also split the file if
it is because ptraj cannot handle large files (>4G).

Here is the format of amber files: http://amber.scripps.edu/formats.html

dawei
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