AMBER Archive (2008)

Subject: AMBER: help regarding warning message

From: snoze pa (snoze.pa_at_gmail.com)
Date: Tue Mar 25 2008 - 11:17:43 CDT

Dear Users,
  I am using amber heme parameter but getting some warning. Do you think i
should take these warning seriously?
thanks for your help.
s

> loadAmberParams /usr/local/amber9/benchmarks/hb/frcmod.hemall
Loading parameters: /usr/local/amber9/benchmarks/hb/frcmod.hemall
Reading force field modification type file (frcmod)
Reading title:
No mass defined for non-bond atom type: LO - skipping
No mass defined for non-bond atom type: LC - skipping
> loadAmberPrep /usr/local/amber9/benchmarks/hb/heme_all.in
Loading Prep file: /usr/local/amber9/benchmarks/hb/heme_all.in
(UNKNOWN ATOM TYPE: NO)
(UNKNOWN ATOM TYPE: CX)
(UNKNOWN ATOM TYPE: CX)
(UNKNOWN ATOM TYPE: NO)
(no charges read on atoms lines in deoxy Heme residue ALL ATOM, Yves
names, Bayly-modified)
Loaded UNIT: HEM

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