AMBER Archive (2008)

Subject: Re: AMBER: compiling AMBER9 with bintraj option on AMD64

From: David A. Case (
Date: Mon Mar 17 2008 - 18:48:00 CDT

On Fri, Mar 14, 2008, Vlad Cojocaru wrote:
> Our administrator is struggling to compile AMBER9 for AMD64 architecture
> (Debian Linux) with the bintraj option. The error he gets is below. It
> seems to be related to the netcdf libs for f90. Has anybody seen
> something like this ? Any idea what can be the problem?

What compiler and OS are you using? Is there any chance that netcdf was
compiled with a different compiler than amber was? If these are gnu-ish
compilers (like g95 or gfortran), it is likely that the -fno-second-underscore
flag needs to be given to the netcdf configure (if it has not been already).

But basically, we need more information; be sure to look carefully for
errors in the netcdf configuration step.


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