AMBER Archive (2008)

Subject: AMBER: RE: Request

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Fri Mar 07 2008 - 14:38:25 CST

Hi Delwar,

I am copying this message to the amber mailing list where such questions
should be posted for others to see - please subscribe - see
http://www.ambermd.org for details.

> I am trying to analyze the data from amber output file. I
> make a new directory
> and put the out put file in the new directory. I also put the
> process_mdout.perl in the same directory. Then I used
>
> Titan[12] delwar$ process_mdout.perl pnbCE.md10.out &
>
> I got the following message.
>
> -bash: ./process_mdout.perl: Permission denied
>
> I therefore request you to help me where and how I need to down the
> process_mdout.perl and then use it for analyze data.

Under Unix / Linux a file has to be executable for you to be able to run it
with ./foo

Do the following:

chmod u+x process_mdout.perl

and then try again. Alternatively you can do:

perl ./process_mdout.perl pnbCE.md10.out

All the best
Ross

/\
\/
|\oss Walker

| Assistant Research Professor |
| San Diego Supercomputer Center |
| Tel: +1 858 822 0854 | EMail:- ross_at_rosswalker.co.uk |
| http://www.rosswalker.co.uk | PGP Key available on request |

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