AMBER Archive (2008)

Subject: AMBER: setBox command

From: Vijay Manickam Achari (vjrajamany_at_yahoo.com)
Date: Wed Mar 05 2008 - 23:20:01 CST

Dear AMBER experts,

I would like to make an inquiry about using setBox command.

When I use the command as setBox bilayer vdw it put a box with dimensions 135.400400 74.936200 123.006200 around my bilayer system.
After browsing AMBER archive http://amber.ch.ic.ac.uk/archive/200708/0210.html and http://structbio.vanderbilt.edu/archives/amber-archive/2007/3248.php , I used the command as below setBox bilayer vdw {135.400400 74.936200 60.000000}.

But I cant see any changes in the box size. It remain the same 135.400400 74.936200 123.006200. Can anyone help me out on how to fix the box size as 135.400400 74.936200 60.000000 ?

Thank you.
Regards

Vijay Manickam
 

Vijay Manickam Achari
(Phd Student c/o Prof Rauzah Hashim)
Chemistry Department,
University of Malaya,
Malaysia
 vjramana_at_gmail.com
       
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