AMBER Archive (2008)

Subject: Re: AMBER: AMBER installation problem

From: Sampath Koppole (sampathkoppole_at_yahoo.com)
Date: Mon Jan 28 2008 - 02:36:27 CST

Dear Amber administrators,
Is Amber 10 already released ? If so, I would like to
ask my system admin to get it.

Thanks for the information.

Cheers,
Sampath.

--- Jun Liu <junliujun_at_gmail.com> wrote:

> Dear Sir/Madam,
>
> When I install AMBER10 under my home directory in a
> NERSC server (System
> Type: Cray XT, CPU Type: Opteron), it fails at the
> part /netcdf/.
>
> /amber10/src/netcdf/src/
> $./configure (It is OK)
> $make check (It stops)
>
> cd .. && /bin/sh
> /u0/j/jianliu/amber10/src/netcdf/src/missing --run
> autoheader
> autom4te: cannot lock autom4te.cache/requests with
> mode 2 (perhaps you are
> running make -j on a lame NFS client?): Function not
> implemented
> autoheader: /usr/bin/autom4te failed with exit
> status: 1
> make[1]: *** [nfconfig.in] Error 1
> make[1]: Leaving directory
> `/u0/j/jianliu/amber10/src/netcdf/src/fortran'
> make: *** [check-recursive] Error 1
>
> If I ignore the above error(s), and do
> $make install (It fails)
>
> make[2]: Nothing to be done for `install-exec-am'.
> test -z "/usr/local/share/man/man3" || mkdir -p --
> "/usr/local/share/man/man3"
> mkdir: cannot create directory
> `/usr/local/share/man': Read-only file system
> make[2]: *** [install-man3] Error 1
> make[2]: Leaving directory
> `/u0/j/junliujun/amber10/src/netcdf/src/f90'
> make[1]: *** [install-am] Error 2
> make[1]: Leaving directory
> `/u0/j/junliujun/amber10/src/netcdf/src/f90'
> make: *** [install-recursive] Error 1
>
>
> Would anyone like to give me a clue on what to
> correct them? Thanks much!
>
> Sincerely yours
> junliujun
>

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