AMBER Archive (2008)

Subject: AMBER: pmemd 9.0 compilation error

From: Raphael Chaleil (raphael.chaleil_at_cancer.org.uk)
Date: Mon Jan 14 2008 - 08:38:12 CST

We tried to compile PMEMD on our cluster ia32 with intel compiler 9.0
and mpich2_1.0-2.

we used the configure to generate the makefile

maestro amber9/src/pmemd > ./configure linux_p4 ifort mpich2 fftw
Intel ifort compiler found; version information:
Version 9.0
Use Intel MKL? (better performance) (answer yes or no):
no
Please enter name of directory where fftw headers are installed:
/farm/bmm/apps/fftw/include
Please enter name of directory where fftw libraries are installed:
/farm/bmm/apps/fftw/lib
File config_data/fft.fftw being used...
File config_data/linux_p4.ifort being used...
File config_data/interconnect.mpich2 being used...
configure assumes mpich2 files are in /farm/bmm/apps/mpich2.
PMEMD Configurate successfully completed.

and then tried to compile and got the folowing error

maestro amber9/src/pmemd > make install
cd src && make install
make[1]: Entering directory `/farm/bmm/apps/amber9/src/pmemd/src'
/lib/cpp -traditional -P -I/farm/bmm/apps/fftw/include
-I/farm/bmm/apps/mpich2/include -DFFTW_FFT -DMPI -DSLOW_NONBLOCKING_MPI
-DDIRFRC_COMTRANS -DDIRFRC_EFS -DFFTLOADBAL_2PROC parallel_dat.fpp
parallel_dat.f90
ifort -c -auto -tpp7 -xN -ip -O3 parallel_dat.f90
fortcom: Error: parallel_dat.f90, line 34: Syntax error, found
END-OF-STATEMENT when expecting one of: => = . ( : %
C
-------^
fortcom: Error: parallel_dat.f90, line 35: Syntax error, found
END-OF-STATEMENT when expecting one of: => = . ( : %
C
-------^
fortcom: Error: parallel_dat.f90, line 36: Syntax error, found
INTEGER_CONSTANT '2001' when expecting one of: => = . ( %
C (C) 2001 by Argonne National Laboratory.
-----------^
fortcom: Error: parallel_dat.f90, line 37: Syntax error, found
IDENTIFIER 'SEE' when expecting one of: => = . ( : %
C See COPYRIGHT in top-level directory.
-------^
fortcom: Error: parallel_dat.f90, line 38: Syntax error, found
END-OF-STATEMENT when expecting one of: => = . ( : %
C
-------^
fortcom: Error: parallel_dat.f90, line 39: Syntax error, found
IDENTIFIER 'DO' when expecting one of: => = . ( :
C DO NOT EDIT
-------^
fortcom: Error: parallel_dat.f90, line 40: Syntax error, found
IDENTIFIER 'THIS' when expecting one of: => = . ( : %
C This file created by buildiface
-------^
fortcom: Error: parallel_dat.f90, line 41: Syntax error, found
END-OF-STATEMENT when expecting one of: => = . ( : %
C
-------^
fortcom: Error: parallel_dat.f90, line 35: This statement is positioned
incorrectly and/or has syntax errors.
C
-------^
fortcom: Error: parallel_dat.f90, line 41: This statement is positioned
incorrectly and/or has syntax errors.
C
-------^
compilation aborted for parallel_dat.f90 (code 1)
make[1]: *** [parallel_dat.o] Error 1
make[1]: Leaving directory `/farm/bmm/apps/amber9/src/pmemd/src'
make: *** [install] Error 2

Any idea what's going wrong?

Thanks a lot 

-- 
Dr Raphael Chaleil
Senior Scientific Officer
Biomolecular Modelling Laboratory
Cancer Reseach UK London Research Institute
Tel: +44 (0)20 7269 3380
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu