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AMBER Archive (2008)Subject: AMBER: build RNA by nucgen
From: 欧阳德方 (ouyangdf1978_at_hotmail.com)
Hi, all,
I want to build RNA by nucgen.
The rna_nuc.in:
NUC 2
END
But the output file rna_nuc.out is:
INPUT MOLECULES INFORMATION
NUC 1
MOLECULE 1 CONTAINS 16 RESIDUES:
G5 C A A C A G U U A C U
MOLECULE 2 CONTAINS 16 RESIDUES:
A5 C G U C G C A G U A A
GENERATING RIGHT HANDED A-RNA(ARNOTT)
reading monomer parameters
It shows only 16 residues for each chain and the output file rna_nuc.pdb is also shown only 16 residues for each chain. It lost the last 5 residues of each chain.
--- ATOM 739 C2 U 32 6.596 -0.670 -3.850 ATOM 740 O2 U 32 7.266 -1.691 -3.850 ATOM 741 N1 U 32 7.098 0.559 -4.200 ATOM 742 C6 U 32 6.317 1.693 -4.190 ATOM 743 C5 U 32 5.019 1.640 -3.850
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