AMBER Archive (2008)

Subject: AMBER: Amber DNA Model for X-ray Crystallography

From: Hopkins, Robert (hopkins_at_uhcl.edu)
Date: Fri Jan 11 2008 - 17:32:00 CST

Dear Amber Users,

 

Is anyone aware of an example where a generic polynucleotide (say, from
nucgen)

was refined using Amber MD and then applied successfully as a search
model

for the Molecular Replacement method in order to solve a single crystal
X-ray

diffraction structure, even as a test of Amber?

 

I'd greatly appreciate any information on such an approach. Thanks!

 

Bob Hopkins

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