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AMBER Archive (2008)Subject: AMBER: Cluster analysis
From: Francesco Pietra (chiendarret_at_yahoo.com)
I am trying a cluster analysis with MMTSB, having as guideline tutorial A3.
Unlike that, once stripped the environment, I have two molecules, a protein and
# orient all frames best fit to backbone in NMR structure
taking into account that atom O (oxygen) is of utmost importance for the
Should the analysis be carried out separately for the protein and the ligand?
Hope the question is not to cryptic.
The first attempts were unsuccessful, though on simplex examples MMTSB did
Thanks
francesco pietra
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